About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001179.1_3113_4055_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3113 - 4055
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTACGTAGA
5'SS Class:
major
3'SS Sequence:
TCTCGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTACTGATTT
Flanking Amino Acid:
DDESAVILDTYTSDLHFRAT
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
62.4
43.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
72.4
0.5
0.8
65.6
30.3
Minor 5ss
36.9
-1.5
3
51.5
45.1
Minor BPS
57.9
0.32
1.9
82.09
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004162
Chromosome:
PEDO01001179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004265
2617 - 12703
10087