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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001179.1_9562_11084_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9562 - 11084
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGCCCA
5'SS Class:
major
3'SS Sequence:
TCTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCCCATTT
Flanking Amino Acid:
VPDSVMLEMKANYSLPEKND
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
54.8
44.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.5
0.57
0.7
69.5
24.3
Minor 5ss
33.4
-1.9
3
40.9
44.9
Minor BPS
44.5
-0.3
2.1
65.73
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004162
Chromosome:
PEDO01001179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004265
2617 - 12703
10087