Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001203.1_31697_33099_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31697 - 33099

Intron Length:

1403

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTATG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

AGTTCTGTATTT

Flanking Amino Acid:

EGIVNEFYEQGDEEASLGLP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.8

38.5

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

93.1

0.97

0.6

91.8

Minor 5ss

-1.4

3.1

50.1

46.4

Minor BPS

48.4

-0

2.2

70.55

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020145

Chromosome:

PEDO01001203.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024109

31406 - 33757

2352