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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001228.1_2109_18399_R

Intron Information:

Intron Rank:
135788
Intron Class:
major
Intron Phase:
Intron Coordinates:
2109 - 18399
Intron Length:
16291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTAATCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79
0.65
0.8
71.8
38.1
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
55.4
0.16
1.8
68.33
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020447
Chromosome:
PEDO01001228.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018975
1239 - 25912
24674