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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001282.1_215_1244_F

Intron Information:

Intron Rank:
140049
Intron Class:
major
Intron Phase:
Intron Coordinates:
215 - 1244
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGGTTTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
69.2
0.69
1.2
78.8
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025292
Chromosome:
PEDO01001282.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034188
30 - 2218
2189