Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001290.1_450_574_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

450 - 574

Intron Length:

125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTCAGTGTA

5'SS Class:

major

3'SS Sequence:

TCGTCCCTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

ACTGCTAAAATT

Flanking Amino Acid:

MKYEQEALNSIM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.3

74.4

36.1

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

69.7

0.44

65.6

Minor 5ss

34.1

-1.8

3.3

45.6

42.7

Minor BPS

45.5

-0.2

1.9

62.25

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030200

Chromosome:

PEDO01001290.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018582

169 - 581

413