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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001312.1_11134_11327_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11134 - 11327
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCACCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CAGTGCTCACCT
Flanking Amino Acid:
HSTTELESDFRTGSYGREKG
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
69.7
0.44
0.8
63.2
33.2
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
44.7
-0.3
2.2
60.89
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030317
Chromosome:
PEDO01001312.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041284
11050 - 13774
2725