Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001314.1_287_477_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

287 - 477

Intron Length:

191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGTGGGGC

5'SS Class:

major

3'SS Sequence:

TGGGTCCCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAG

U12 Branch Point Sequence:

TGTGCCTCAGGG

Flanking Amino Acid:

VLGDTTYGRWADNAGSPPPS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.1

50.9

40.4

Major BPS

46.3

-0.2

1.6

53.3

44.2

Major PPT

66.9

0.38

0.9

62.7

39.7

Minor 5ss

29.8

-2.3

3.4

31.5

43.1

Minor BPS

44.1

-0.5

2.2

52.32

47.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020706

Chromosome:

PEDO01001314.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044287

209 - 828

620