Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001345.1_1294_2535_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1294 - 2535

Intron Length:

1242

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGCAGG

5'SS Class:

major

3'SS Sequence:

TCTCCCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTCAC

U12 Branch Point Sequence:

TTGCTGCCAGCC

Flanking Amino Acid:

FQVQLEHLQSRLRRQQSTPL

Intron Amino Acid Position:

483

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

46.2

Major BPS

59.7

0.24

1.3

65.3

41.6

Major PPT

82.7

0.73

0.7

76.9

Minor 5ss

33.8

-1.8

2.9

40.5

45.4

Minor BPS

35.3

-1.1

2.3

48.4

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005216

Chromosome:

PEDO01001345.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005393

167 - 7766

7600