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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001345.1_2640_2742_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2640 - 2742
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAGAC
U12 Branch Point Sequence:
ACAGCCCCATCC
Flanking Amino Acid:
KKELAQAEDELDEAHNQARK
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
49.6
-0
1.1
46.4
38.9
Major PPT
74.2
0.55
0.7
68.7
25
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
40.1
-0.7
2
46.63
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005216
Chromosome:
PEDO01001345.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005393
167 - 7766
7600