Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001345.1_2914_3186_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2914 - 3186

Intron Length:

273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGAGGG

5'SS Class:

major

3'SS Sequence:

CCTTCTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

CCATGCTCAGCC

Flanking Amino Acid:

IQAELFEKNKELADLKHIHT

Intron Amino Acid Position:

392

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

58.6

40.6

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

78.5

0.64

0.8

72.5

32.2

Minor 5ss

30.5

-2.2

3.2

46.9

Minor BPS

43.6

-0.5

2.1

51.12

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005216

Chromosome:

PEDO01001345.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005393

167 - 7766

7600