Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001356.1_909_1286_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

909 - 1286

Intron Length:

378

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TTGGTTTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACAGAT

U12 Branch Point Sequence:

GAGCACAGATGT

Flanking Amino Acid:

CSTLNCTLVNEKMWKARRCV

Intron Amino Acid Position:

262

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

68.5

36.3

Major BPS

0.1

50.3

35.4

Major PPT

75.6

0.58

1.1

72.9

42.2

Minor 5ss

29.6

-2.3

3.5

35.6

42.2

Minor BPS

32.8

-1.2

1.9

42.82

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016542

Chromosome:

PEDO01001356.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017329

21 - 1428

1408