Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001360.1_1099_1180_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1099 - 1180

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GTGATCTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

AAGTTGCTAATG

Flanking Amino Acid:

KASHYALQGYREPFLLGKRS

Intron Amino Acid Position:

413

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

1.2

76.7

33.6

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

69.2

0.43

0.9

62.8

39.5

Minor 5ss

29.4

-2.4

2.9

36.5

40.5

Minor BPS

42.6

-0.7

2.2

46.9

40.5

Associated Gene:

Gene:

TMEM214

Ensembl Gene ID:

ENSAPLG00000023938

Chromosome:

PEDO01001360.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044036

527 - 4172

3646