Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001404.1_1259_1499_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1259 - 1499

Intron Length:

241

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGCACG

5'SS Class:

major

3'SS Sequence:

CCCCCCCCCAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TAACCCTCACTC

Flanking Amino Acid:

GVRFVTSLDKLKTPVGRGRA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

62.3

43.9

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

56.1

0.14

0.9

54.8

20.5

Minor 5ss

32.9

-2

3.1

39.9

45.9

Minor BPS

48.4

-0.1

1.8

58.56

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027963

Chromosome:

PEDO01001404.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037409

21 - 3255

3235