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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_10611_10699_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10611 - 10699
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCATCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTGCTTTAATT
Flanking Amino Acid:
EKEKHATENKVKNLTEEMAA
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
66
38.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
67.1
0.39
1
67.4
31.4
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
73.1
0.8
1.3
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016357
52 - 19127
19076
ENSAPLT00000012500
52 - 19059
19008
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008