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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_11766_11999_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11766 - 11999
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAAC
5'SS Class:
major
3'SS Sequence:
ATCATCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTTTCATACCT
Flanking Amino Acid:
SNMESVSKAKANLEKMCRTL
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.5
39
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
66.9
0.38
1
60.8
39.6
Minor 5ss
30.8
-2.2
3.4
42.1
44.9
Minor BPS
58.4
0.34
1.9
80.09
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016357
52 - 19127
19076
ENSAPLT00000012500
52 - 19059
19008
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008