Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_13731_14128_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13731 - 14128

Intron Length:

398

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGGGCAAG

5'SS Class:

major

3'SS Sequence:

CCTTTCCAGGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTTAC

U12 Branch Point Sequence:

GCTTACTTACCC

Flanking Amino Acid:

RTEELEEAKYKLAQRLQDAE

Intron Amino Acid Position:

1218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.4

0.32

1.1

57.9

42.8

Major BPS

73.7

0.59

0.9

63.6

35.1

Major PPT

57.5

0.17

1.1

60.5

34.7

Minor 5ss

34.3

-1.8

3.2

43.1

44.6

Minor BPS

0.23

1.9

68.03

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011970

Chromosome:

PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008943

52 - 19059

19008