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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_1383_1542_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1383 - 1542
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCA|GCTAGTGGG
5'SS Class:
weak_major
3'SS Sequence:
TATTGTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
CATATTTGAAAA
Flanking Amino Acid:
RVIQYFATIAGTLEDQIISA
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1.5
57.1
45
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
72
0.5
0.8
66.8
35.2
Minor 5ss
20.3
-3.4
3.6
29.7
36.5
Minor BPS
47.7
-0.1
1.5
54.99
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008943
52 - 19059
19008