Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_14561_14761_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14561 - 14761

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTCCC

5'SS Class:

major

3'SS Sequence:

TCTGACCTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

GATTTCTGACCT

Flanking Amino Acid:

TLKRENKNLQQQIAEGGKIE

Intron Amino Acid Position:

1333

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.4

60.6

44.5

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

72.4

0.5

0.9

64.9

36.1

Minor 5ss

36.4

-1.5

2.8

41.7

37.6

Minor BPS

56.7

0.29

1.8

74.67

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011970

Chromosome:

PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008943

52 - 19059

19008