Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_14866_15148_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14866 - 15148

Intron Length:

283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACATGCC

5'SS Class:

major

3'SS Sequence:

CTTTGTTATTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GATTTTAAAATT

Flanking Amino Acid:

EIQAALEEAEASLEHEEGKI

Intron Amino Acid Position:

1357

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

67.8

38.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

82.7

0.74

0.9

81.1

35.6

Minor 5ss

32.2

-2

3.4

44.7

43.3

Minor BPS

47.4

-0.1

1.8

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011970

Chromosome:

PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012498

52 - 19059

19008

ENSAPLT00000008943

52 - 19059

19008

ENSAPLT00000016357

52 - 19127

19076