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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_15458_18090_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15458 - 18090
Intron Length:
2633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
TTTTCTCTCACA
Flanking Amino Acid:
NLRNTQGVLKDTQIHLDDAL
Intron Amino Acid Position:
1460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
70
0.5
1
59.6
38.6
Major PPT
77.3
0.61
0.8
72.7
31.1
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
60.1
0.31
2.1
79.78
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016357
52 - 19127
19076
ENSAPLT00000012500
52 - 19059
19008
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008