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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_1636_2467_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1636 - 2467
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TATTCATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
TVRNDNSSRFGKFIRIHFGA
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.1
0.5
1.1
71.8
37.1
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016357
52 - 19127
19076
ENSAPLT00000012500
52 - 19059
19008
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008