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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_18295_18855_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18295 - 18855
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CCGTCTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CCGTCTTTGACA
Flanking Amino Acid:
SERVQLLHTQNTSLINTKKK
Intron Amino Acid Position:
1528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
77.1
32.4
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
71.3
0.48
1
67.4
37.9
Minor 5ss
38.9
-1.3
3
51.2
45.4
Minor BPS
65.7
0.49
1.3
65.32
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008
ENSAPLT00000016357
52 - 19127
19076
ENSAPLT00000012500
52 - 19059
19008