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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_18982_19076_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18982 - 19076
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTGCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATGCCTTTGATT
Flanking Amino Acid:
EEKAKKAITDASMMAEELKK
Intron Amino Acid Position:
1610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.8
39.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
81.5
0.71
0.8
73.8
36.8
Minor 5ss
36.6
-1.5
2.9
44.8
43.4
Minor BPS
64.3
0.53
1.2
74.27
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016357
52 - 19127
19076