About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_2813_2903_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2813 - 2903
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
TTCTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTTTCTTACTT
Flanking Amino Acid:
IMSNKKPELIDMLLITTNPY
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
87.6
0.85
0.7
85.4
28
Minor 5ss
31.5
-2.1
3.2
36.3
42
Minor BPS
68.4
0.66
1.6
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012500
52 - 19059
19008
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008
ENSAPLT00000016357
52 - 19127
19076