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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_3262_5098_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3262 - 5098
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAGCA
5'SS Class:
major
3'SS Sequence:
TCCTGCTACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTCAACTTGATT
Flanking Amino Acid:
EEQAEPDGTEVADKAAYLMG
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.8
37
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
67.1
0.39
0.9
65.7
35.1
Minor 5ss
29.7
-2.3
3.4
40.1
45.4
Minor BPS
61
0.43
1.6
76.81
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012500
52 - 19059
19008
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008
ENSAPLT00000016357
52 - 19127
19076