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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_6408_7168_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6408 - 7168
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
TAATATCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTGTATT
Flanking Amino Acid:
LAACIELIEKPMGIFSILEE
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.2
0.59
1
66.6
44.3
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
56.9
0.3
1.8
77.52
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008
ENSAPLT00000016357
52 - 19127
19076
ENSAPLT00000012500
52 - 19059
19008