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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_7464_7571_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7464 - 7571
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGAGCAG
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTTTTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGTTTTTGAAG
Flanking Amino Acid:
KTLALLFANYEASGGGASGG
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.8
0.14
1.1
42.5
40.1
Major BPS
80
0.75
1
78.6
31
Major PPT
80.9
0.7
1
82.9
32.5
Minor 5ss
22.8
-3.1
3.3
24.8
39.8
Minor BPS
57.4
0.09
1.5
62.4
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012498
52 - 19059
19008