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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_7658_8189_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7658 - 8189
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
CATTATCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATCTAAACT
Flanking Amino Acid:
SFQTVSALFRENLNKLMTNL
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
69
38.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.5
0.51
0.9
65.4
35.6
Minor 5ss
37.3
-1.4
3.4
46.5
48.9
Minor BPS
64.4
0.53
1.7
81.22
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008
ENSAPLT00000016357
52 - 19127
19076
ENSAPLT00000012500
52 - 19059
19008