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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001411.1_8904_9005_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8904 - 9005
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGACATT
5'SS Class:
major
3'SS Sequence:
CATTATGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATGC
Flanking Amino Acid:
RVEYQRMVERRESIFCIQYN
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
75.1
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.9
0.54
1
69.8
40.9
Minor 5ss
43.3
-0.7
3.4
65.5
45.8
Minor BPS
51.4
0.02
2.1
70.01
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011970
Chromosome:
PEDO01001411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012498
52 - 19059
19008
ENSAPLT00000008943
52 - 19059
19008
ENSAPLT00000016357
52 - 19127
19076
ENSAPLT00000012500
52 - 19059
19008