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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001418.1_2009_2158_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2009 - 2158
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
TGTCCCCAAACA
Flanking Amino Acid:
RDPNPSDVLENLDDSVFSKR
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
66.5
44.9
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
64.8
0.33
1
59.3
36
Minor 5ss
33.5
-1.9
3
42.2
44.5
Minor BPS
53
0.09
2
70.78
40.8

Associated Gene:

Gene:
MSL1
Ensembl Gene ID:
ENSAPLG00000012269
Chromosome:
PEDO01001418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037574
29 - 2932
2904
ENSAPLT00000023707
8 - 2932
2925
ENSAPLT00000012773
485 - 2932
2448
ENSAPLT00000048462
8 - 2932
2925