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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001418.1_2538_2646_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2538 - 2646

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GTCTCTCCCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCCCAT

U12 Branch Point Sequence:

ATCCCCGTGACG

Flanking Amino Acid:

VTSFFPEPDDVESLLITPYL

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

63.5

0.33

1.2

72.5

34.6

Major PPT

0.56

0.8

68.7

31.9

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

-0.2

2.1

58.32

43.4

Associated Gene:

Gene:

MSL1

Ensembl Gene ID:

ENSAPLG00000012269

Chromosome:

PEDO01001418.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037574

29 - 2932

2904

ENSAPLT00000023707

8 - 2932

2925

ENSAPLT00000012773

485 - 2932

2448

ENSAPLT00000048462

8 - 2932

2925