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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001418.1_2720_2841_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2720 - 2841
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCTCTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TCAGGGCCACCT
Flanking Amino Acid:
FGRPLPKLTPQNFELPWLDE
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
71.4
0.48
0.8
64.9
30.7
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
28.7
-1.5
2.4
44.94
45.9

Associated Gene:

Gene:
MSL1
Ensembl Gene ID:
ENSAPLG00000012269
Chromosome:
PEDO01001418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012773
485 - 2932
2448
ENSAPLT00000048462
8 - 2932
2925
ENSAPLT00000037574
29 - 2932
2904
ENSAPLT00000023707
8 - 2932
2925