Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001426.1_1432_1639_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1432 - 1639

Intron Length:

208

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTCACATCA

5'SS Class:

weak_major

3'SS Sequence:

GTTTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TGCCCCTCACCC

Flanking Amino Acid:

EGFPHPISAPGSHTVQRMYG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.12

1.4

54.9

39.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

93.5

0.98

0.7

92.3

26.6

Minor 5ss

39.3

-1.2

2.9

46.3

43.7

Minor BPS

49.3

-0

1.9

61.1

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028429

Chromosome:

PEDO01001426.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040374

545 - 1910

1366

ENSAPLT00000029569

575 - 1910

1336