Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001426.1_530_778_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

530 - 778

Intron Length:

249

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAA|GCAGAATGG

5'SS Class:

weak_major

3'SS Sequence:

GCTGTATGAGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCTGTAT

U12 Branch Point Sequence:

GGGTCTGTAGGG

Flanking Amino Acid:

QPGLFSWGEPTGAPLGGPQP

Intron Amino Acid Position:

271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.9

0.23

1.2

45.5

42.2

Major BPS

46.5

-0.2

1.5

45.3

47.5

Major PPT

45.4

-0.2

1.7

47.5

Minor 5ss

26.7

-2.7

4.2

42.1

Minor BPS

38.5

-1

2.3

40.16

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028429

Chromosome:

PEDO01001426.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038997

441 - 1944

1504