Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001432.1_575_673_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

575 - 673

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGCACC

5'SS Class:

major

3'SS Sequence:

CCTCGCCACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCGCCAC

U12 Branch Point Sequence:

TCCTCGCCACGC

Flanking Amino Acid:

ACTRDAFDSLVPLPEEIPVV

Intron Amino Acid Position:

361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

67.6

37.6

Major BPS

45.9

-0.2

1.4

52.1

43.1

Major PPT

64.5

0.33

0.9

57.7

32.1

Minor 5ss

35.3

-1.7

2.8

41.4

39.1

Minor BPS

32.4

-1.3

2.5

42.5

44.8

Associated Gene:

Gene:

RAPGEFL1

Ensembl Gene ID:

ENSAPLG00000010572

Chromosome:

PEDO01001432.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010995

16 - 3234

3219