Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001441.1_7146_7981_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7146 - 7981

Intron Length:

836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CCCTCCCGCCAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CAAAAAC

U12 Branch Point Sequence:

TGCCCAAAAACC

Flanking Amino Acid:

HVGLTFQSFEIERHDSCAYD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.1

34.7

Major BPS

46.3

-0.2

29.8

Major PPT

53.8

0.09

51.5

31.6

Minor 5ss

26.1

-2.7

3.2

42.6

Minor BPS

-0.5

2.1

55.02

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017696

Chromosome:

PEDO01001441.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022942

2967 - 8618

5652

ENSAPLT00000022315

1851 - 8406

6556

ENSAPLT00000029716

5642 - 8599

2958

ENSAPLT00000029621

2924 - 8618

5695