Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001454.1_34_276_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34 - 276

Intron Length:

243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCAGG

5'SS Class:

major

3'SS Sequence:

CTCTCCCCGTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAC

U12 Branch Point Sequence:

CAGCGCTCACCC

Flanking Amino Acid:

VLGMVFLQGDALLV

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

46.2

Major BPS

57.5

0.19

1.1

60.7

37.6

Major PPT

70.8

0.47

0.9

69.6

31.2

Minor 5ss

33.8

-1.8

2.9

40.5

45.4

Minor BPS

40.2

-0.7

2.1

44.92

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024744

Chromosome:

PEDO01001454.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041828

21 - 997

977