Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001472.1_184_1034_F

Intron Information:

Intron Rank:

140838

Intron Class:

major

Intron Phase:

Intron Coordinates:

184 - 1034

Intron Length:

851

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGCGCT

5'SS Class:

major

3'SS Sequence:

TCTGCTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGACGAG

U12 Branch Point Sequence:

TCTGCTTTTCCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

69.8

39.5

Major BPS

32.3

-1.1

1.4

Major PPT

84.6

0.78

0.8

76.4

37.6

Minor 5ss

37.6

-1.4

3.6

56.2

48.2

Minor BPS

40.2

-0.7

3.6

62.29

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025856

Chromosome:

PEDO01001472.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040081

21 - 1921

1901