About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001475.1_1173_1321_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
1173 - 1321

Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTG|GTAAGCCGT

5'SS Class:
major

3'SS Sequence:
CTGTCCCTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTGAT

U12 Branch Point Sequence:
TGCTGATGCATC

Flanking Amino Acid:
GKRQSKTLKYWVLWLVLWTG

Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.9
0.71
1
65.4
46

Major BPS
76.2
0.65
1.1
65.3
43.7

Major PPT
79.7
0.67
0.8
73.3
31.6

Minor 5ss
39.7
-1.2
3.2
53.5
45.5

Minor BPS
38.1
-0.9
2.3
48.75
41.5

Associated Gene:

Gene:
G6PC

Ensembl Gene ID:

Chromosome:
PEDO01001475.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 2880
2860