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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001479.1_3583_3760_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3583 - 3760
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CCAGCCTTACCA
Flanking Amino Acid:
VVVPEGHHIQVQDGQITHIQ
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75.9
0.58
0.8
73.3
30.4
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
53
0.09
1.8
59.37
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024724
Chromosome:
PEDO01001479.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024322
21 - 5353
5333