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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001479.1_456_539_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
456 - 539
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGACCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
66.4
0.37
1.1
58.3
42.8
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
61.8
0.45
1.8
81.31
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024724
Chromosome:
PEDO01001479.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024322
21 - 5353
5333