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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001479.1_635_761_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
635 - 761
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAC
U12 Branch Point Sequence:
CTGCGATTGACT
Flanking Amino Acid:
QRELATGSLQVAVVKPDDSG
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
60.9
0.27
1.2
55.1
42.1
Major PPT
75
0.56
0.7
69.2
24.6
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
46.9
-0.1
2.1
65.63
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024724
Chromosome:
PEDO01001479.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024322
21 - 5353
5333