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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001487.1_5348_7315_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5348 - 7315
Intron Length:
1968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
MSTISKNSLKK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
77.9
0.63
0.9
70.3
41
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001610
Chromosome:
PEDO01001487.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001602
5343 - 9750
4408