Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001508.1_1161_1822_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1161 - 1822

Intron Length:

662

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGGGCT

5'SS Class:

major

3'SS Sequence:

ACGTTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TTCACCTGAGCT

Flanking Amino Acid:

RGSLLGCSIDITSAFDMEAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.3

70.5

38.9

Major BPS

90.7

1.01

0.7

19.9

Major PPT

80.3

0.68

0.9

77.2

36.4

Minor 5ss

33.2

-1.9

3.6

47.1

Minor BPS

58.6

0.35

1.8

77.98

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005185

Chromosome:

PEDO01001508.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046824

186 - 4387

4202

ENSAPLT00000042709

53 - 4287

4235

ENSAPLT00000023525

21 - 4577

4557