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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001508.1_3418_3530_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3418 - 3530
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
CTCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATTTTCCACT
Flanking Amino Acid:
MHTIGFAVYEVPEEAQGSQN
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.8
0.56
0.7
69
24.8
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
48.3
-0
1.9
67.98
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005185
Chromosome:
PEDO01001508.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023525
21 - 4577
4557