Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001508.1_3887_4127_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3887 - 4127

Intron Length:

241

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAA|GCAGTCGGA

5'SS Class:

weak_major

3'SS Sequence:

CTGTGGGCAGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CGCCGAG

U12 Branch Point Sequence:

GGGCCGGGAGCT

Flanking Amino Acid:

ADFVLRVFTEKWPCGFGVLC

Intron Amino Acid Position:

459

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.3

53.2

40.9

Major BPS

37.1

-0.8

1.5

27.2

35.5

Major PPT

44.3

-0.3

1.7

43.4

42.3

Minor 5ss

25.8

-2.8

4.3

45.5

Minor BPS

33.1

-1.2

2.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005185

Chromosome:

PEDO01001508.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042709

53 - 4287

4235