About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001508.1_692_773_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
692 - 773
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
CTTTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCCTGCTCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
84.4
0.77
0.7
77.3
31.5
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
45.7
-0.3
2.2
57.93
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005185
Chromosome:
PEDO01001508.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042709
53 - 4287
4235
ENSAPLT00000023525
21 - 4577
4557
ENSAPLT00000046824
186 - 4387
4202