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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001548.1_16499_17400_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16499 - 17400
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CCTTCCTTGAAG
Flanking Amino Acid:
KKLCSKMTEVTTQWLEILQR
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
67
38.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
70.4
0.46
1
70.8
27.6
Minor 5ss
32.4
-2
3
37.8
40.6
Minor BPS
63.7
0.29
1.6
63.47
44.6

Associated Gene:

Gene:
UNC45B
Ensembl Gene ID:
ENSAPLG00000007713
Chromosome:
PEDO01001548.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008034
16238 - 32716
16479