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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001548.1_27148_27700_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27148 - 27700
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGCCTCTGACG
Flanking Amino Acid:
RRLGADIQEKLRIQFSTDLR
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69
0.43
1
63.8
41.7
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
47.6
-0.3
1.8
52.4
42.7

Associated Gene:

Gene:
UNC45B
Ensembl Gene ID:
ENSAPLG00000007713
Chromosome:
PEDO01001548.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008034
16238 - 32716
16479